Publication List (with working paper)

Working paper

  • Banghe Li, Yuefeng Shen and Bo Li: Quasi-Steady State Laws in Enzyme Kinetics. (2007/07/09, has accepted by Journal of Physical Chemistry A)

  • Banghe Li, Bo Li and Yuefeng Shen: Can One Measure All Rate Constants in the Simplest Enzyme Kinetics Model.  (2008/01/04)

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    Jounal paper

    2003 2004 2005 2006 2007

    2003

  • Chen Min, Kam C.Yuen and Zhu Lixing, Asymptotics of the goodness-of-fit test for a partial inear model with randomly censored data, Science in China, Vol. 46, 145-158, 2003.

  • Ji-Hong Zhang, Ling-Yun Wu and Xiang-Sun Zhang, Reconstruction of DNA sequencing by hybridization, Bioinformatics, vol.19, no.1, pp.14-21, 2003. (Abstract, PDF).

  • Luo-Nan Chen, Tian-Shou Zhou, Yun Tang, Xiang-Sun Zhang, Structure of Alignment of Protein by Mean Field Annealing. ICSB2003.

  • Lixia Jin, Weiwu Fang, Huanwen Tang, Predicting protein structure class by a new method of information theory.  J. of computational biology and chemistry, Vol.27, No.3, 2003.

  • Li Gang and Wang Q.H.(2003): Empirical likelihood regression analysis for right censored data, Statistica Sinica, 13(1), 51-68, 2003.

  • Jinhong You, Gemai Chen and Min Chen, The convergence rate of autocovariance estimator in partial linear models with linear time series errors. ACTA Math. Appl. Sinica, 2003.

  • Sun L. Fixed design nonparametric regression with truncated and censored data.  Acta Math. Appl. Sinica (English Series). Vol. 19, No. 2, 229-238, 2003.

  • Zhou X.and Sun L, Additive hazards regression withmissing censoring information, Statistica Sinica, Vol. 13, No. 4. 2003.

  • Sun L.,Kim Y.and Sun J. Regression analysis of doubly censored failure time data from additive hazards model, Revised for Biometrics. 2003.

  • Wai-Cheung Ip, Hueng Wong and Min Chen. Testing normaliti for linear AR(p) models. Comm. Statist. Meth. & Theory, 2003.

  • Wan A. T. K., Chaturvedi A. and Zou Guohua （邹国华）. Unbiased estimation of the MSE matrices of improved estimators in linear regression.  Journal of Applied Statistics, 30: 173-189. 2003.

  • Wang Q. H, Dimension reduction in partly linear error-in-response model error-in-response models with validation data, Journal of Multivariate Analysis, 85(2) , 234-252, 2003.

  • Wang Q. H, Estimation of partial linear error- in-response models with validation data. Ann. Inst. Statist.Math., 55(1), 21-39, 2003.

  • Wang Q. H. and Jing B. Y. Empirical likelihood for partial linear model. Ann. Inst. Statist. Math., 55(3), 585- 595, 2003.

  • Weiwu Fang, F. S. Roberts and Zhengrong Ma, A measure of discrepancy of multiple sequences, Information Science, Vol.137, 75-102, 2001.

  • Zhang Junhua and Fang Weiwu, A new approach of information discrepancy to analysis of questionnaire,  Communication in Statistics--Theory and Methods. Vol. 32, No. 2, pp.435-457, 2003.

  • Zou Guohua（邹国华），Pan Deyun and Zhao Hongyu, Genotyping error detection through tightly linked markers, Genetics, 164:, 1161-1173, 2003.

  • Zou Guohua （邹国华）and Zhao Hongyu, Haplotype frequency estimation in the presence of genotyping errors. Human Heredity, 56: 131-138, 2003.

  • Zou Guohua （邹国华）and Wan A. T. K.  Admissible and minimax estimation of the parameter n in the binomial distribution. J. Statist. Plann. Inference,  113: 451- 466, 2003.

  • 田玉斌，李国英，蔡瑞娇，同型不同批燃爆产品的感度分布建模，爆炸与冲击，2003年第2期, 122-127

  • 吴启光，李国英，赵勇辉，用于指数可靠性增长模型的一类新先验分布，数学物理学报，2003年第4期，474-484.

  • 王冰、唐焕文、修志龙、方伟武,基于信息离散性度量方法的大肠杆菌全基因组比较研究，中国生物工程杂志，23(11)，57-62, 2003.

  • 张文，唐焕文，方伟武，修志龙, 信息离散性度量方法在SARS病毒研究中的应用，计算机与化学，Vol.11, No.6, 2003.

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    2004     

  • Cai,Xu and Weiwu Fang. Modified Kimura two-parameters distance of molecular sequence based on maximum likelihood estimate. Proceedings of ORSC 2004, pp.459-465, Global-Link Publishing Company, 2004. (In Chinese)

  • Chen, G.M.,P Choi and Y. Zhou. Nonparametric estimation for structural change points in volatility models for time series. To appear in Journal of Econometrics, 2004.

  • Fan,J.,H. Lin and Y. Zhou. Local partial-likelihood estimation for life time data. Temporarily accepted in The Annuals of Statistics.

  • Gu,Ming-Gao, Liuquan Sun and Changquan Huang. A universal procedure for parametric frailty models. J. Statist. Comput. Simulation. 74(1), 1-13, 2004.

  • Li,Bang-he. Describing DNA sequences by 2-dimensional walks. Acta Analysis Functionalis Applicata, 6(1), 1-4, 2004.

  • Li,Guo-ying. Two statistical methods related to splice site recognition. Sino–India Workshop on Genome Informatics, October 27-30, 2004.

  • Li,Guo-ying and Xinmin Li. Confidence intervals for sum of variance components under unbalanced designs. The 6th World Congress of the Bernoulli Society for Mathematical Statistics and Probability and the 67th Annual Meeting of the Institute of Mathematical Statistics, Barcelona, July 26-31, 2004.

  • Li,Guo-ying, Yu-bin Tian and Jie Yang. Saddlepoint inference for response probabilities under Logistic tolerance distributions. The 8th China-Japan Symposium on Statistics, Guilin, October 15-18, 2004.

  • Li,Qi-zhai and Guo-ying Li. A statistical method for recognizing translation start sites. The 8th China-Japan Symposium on Statistics, Guilin, October 15-18, 2004.

  • Li,Zhen-Ping, Xiang-Sun Zhang and Luonan Chen. Unique optimal foldings of proteins on a triangular lattice. Applied Bioinformatics, accepted.

  • Shen,X and Jian Shi. Sieve likelihood ratio inference on general parameter space. Science in China, To appear.

  • Sun,Jianguo and Liuquan Sun. Semiparametric linear transformation models for current status data. To appear in Canadian. J. Statist. 33(1), 2004.

  • Sun,Jianguo, Liuquan Sun and Nancy Flournoy. Additive hazards model for competing risks analysis of the case-cohort design. Commun. Statist, Theory and Methods, 33(2), 351-366, 2004.

  • Sun,Liuquan, Y. Kim and Jianguo Sun. Regression analysis of doubly censored failure time data using the additive hazards model. Biometrics, 60(3),637-643, 2004.

  • Tian,Maozai and Guo-ying Li. A quasi-residuals method in sliced inverse regression, Stat. & Prob. Letters, 66(2), 205-212, 2004.

  • Tian,Y. and Guo-ying Li. Saddle-point approach to inference in sensitivity experiments under logistic response distributions, International Conference in honour of Sir David Cox on the occasion of his 80th birthday, Neuchatel, Switzerland, July 14-18, 2004.

  • Tian,Yubin, Guo-ying Li and Jie Yang. Confidence lower limits for response probabilities under the logistic response model. Journal of Systems Science and Complexity, Vol.17, No.2, 289-296, 2004.

  • Tu, Sili, Weiwu Fang and Xu Cai. Analysis and meaning of longest conservative patterns in mitochondrial genomes. Proceedings of ORSC 2004, pp.807-813, Global-Link Publishing Company, 2004. (In Chinese)

  • Wan,A.T.K. and Guohua Zou. On estimating the losses of improved estimators. J. Statist. Plann. Inference, 119(1), 17-22, 2004.

  • Wang,Q.H. Likelihood-Based imputation inference for mean functionals in the presence of missing responses. Ann. Inst. Statist. Math., 56(3), 403-414, 2004.

  • Wang,Q.H. and Hardle Wolfgang. Empirical likelihood-based dimension reduction inference for linear error-in-responses models with validation study. Science in China, To appear.

  • Wang,Q.H. and B.-Y. Jing. Estimation by method of moment under two-Sample location-scale model with random censorship. Journal of Nonparametric Statistics, To appear.

  • Wang,Q.H., O. Linton and W. Hardle. Semiparametric regression analysis with missing response at random. Journal of the American Statistical Association (JASA.), 99(466), 334-345, 2004.

  • Wang,Rui-Sheng, Ling-Yun Wu, Zhen-Ping Li and Xiang-Sun Zhang. A genetic algorithm for the individual haplotyping problem. Proceedings of ORSC 2004, pp.814-823, Global-Link Publishing Company, 2004.

  • Wu,Ling-Yun, Xiang-Sun Zhang and Ju-Liang Zhang. Capacitated facility location problem with general setup cost. Computers & Operations Research, accepted.

  • Xiong, Shi-Feng and Guo-ying Li. Testing for the maximum cell probability in multinomial distributions. The 8th China-Japan Symposium on Statistics, Guilin, October 15-18, 2004.

  • Xiu,Naihua, Yiju Wang and Xiang-Sun Zhang. Modified fixed-point equations and related iterative methods for variational inequalities. Computers and Mathematics with Applications, Vol. 47, pp.913-920, 2004.

  • Xue,Hongqi, K.F. Lam and Guo-ying Li. Sieve maximum likelihood estimator for semiparametric regression models with current status data. J. Amer. Stat. Assoc., 99(466), 346-356, 2004.

  • Zhan,Zhong-Wei, Yong Wang, Ling-Yun Wu and Xiang-Sun Zhang. Evaluation of E-government services based on data envelopment analysis. Proceedings of ORSC 2004, pp.348-354, Global-Link Publishing Company, 2004. (In Chinese)

  • Zhang,Ji-Hong, Ling-Yun Wu, Yong Wang, Zhen-Ping Li and Xiang-Sun Zhang. A statistical method based on Markov chain for optimal reconstruction of haplotype from genotype data with SNP, Proceedings of ORSC 2004, pp.1268-1278, Global-Link Publishing Company, 2004.

  • Zhang,Junhua and Weiwu Fang. Asymptotic distributions of a measure of information discrepancy among multiple discrete distributions. Proceedings of ORSC 2004, pp.1278-1787, Global-Link Publishing Company, 2004. (In Chinese)

  • Zhang,Wen, Weiwu Fang, Huanwen Tang and Xu Cai. The microbial phylogeney based on complete proteome and a new measure of information discrepancy. Proceedings of ORSC 2004, pp.799-806, Global-Link Publishing Company, 2004. (In Chinese)

  • Zhang,Xiang-Sun, Zhen-Ping Li and Wenfeng Zhou. A neural network algorithm for the (m,d)-coloring problem of a graph. Proceedings of ORSC 2004, pp.382-389, Global-Link Publishing Company, 2004.

  • Zhang,Xiang-Sun, Yong Wang, Zhong-Wei Zhan, Ling-Yun Wu and Luonan Chen. Exploring protein's optimal HP configurations by self-organizing mapping. Journal of Bioinformatics and Computational Biology, accepted.

  • Zhang,Zhigang, Jianguo Sun and Liuquan Sun. Statistical analysis of current status data with informative observation times. To appear in Statistics in Medicine.

  • Zhang,Zhigang, Liuquan Sun, Xingqiu Zhao and Jianguo Sun. Regression analysis of interval-censored failure time data with linear transformation models. To appear in Canadian. J. Statist. 33(3), 2004.

  • Zhao,Yu-Ying, Ling-Yun Wu, Rui-Sheng Wang, Zhen-Ping Li and Xiang-Sun Zhang. Haplotyping an individual from weighted SNPs fragments. Proceedings of ORSC 2004, pp.824-830, Global-Link Publishing Company, 2004.

  • Zhou,Xian, Jianguo Sun and Liuquan Sun. A uniform semiparametric approach for longitudinal data analysis. To appear in Far East Journal of Theo. Statist. 15(2), 2004.

  • Zhou,Y., and H. Li. The law of logarithm for quantile density function under truncated and censored data. To appear in Chinese J. Appl. Probab. Statist.

  • Zhou,Y. and H. Liang. Empirical likelihood-based semiparametric inference of the treatment effect in the two-sample problem with censoring. To appear in Biometrika.

  • Zou,Guohua and Hongyu Zhao. Family-based association tests for different family structures using pooled DNA. Annals of Human Genetics, accepted.

  • Zou,Guohua and Hongyu Zhao. The estimation of sibling genetic risk parameters revisited. Genet. Epidemiol., 26(4), 286-293, 2004.

  • Zou,Guohua and Hongyu Zhao. The impacts of errors in individual genotyping and DNA pooling on association studies. Genet. Epidemiol., 26(1), 1-10, 2004.

  • 黄宝胜,于丹,李国英. 不同环境应力下可靠性增长单调模型的数据分析. 系统工程理论与实践.

  • 李珍萍,闫桂英.关于图的孤立韧度与分数因子存在性的若干结果, 应用数学学报, 2004年第2期.

  • 李珍萍,闫桂英,章祥荪. 孤立韧度与分数k-覆盖图. 应用数学学报, 2004年第4期.

  • 王冰,唐焕文,修志龙,方伟武.基于一种新的信息论方法的大肠杆菌基因序列的研究. 中国生物工程, 23(11), 57-62, 2004.

  • 王启华.经验似然统计推断方法发展综述. 数学进展, 33(2), 141-151, 2004.

  • 吴启光,李国英, 顾岚, 赵志源. 双参数威布尔分布下可靠性抽样检验. 应用概率统计, 20(3), 270-286, 2004.

  • 闫霞,于丹,李国英.一类可修威布尔型设备可用度的 Fiducial 推断. 系统科学与数学, 24(1), 17-27, 2004.

  • 张继红,郭世贞.非时齐部分可观察Markov决策规划的最优策略问题, 运筹学学报, Vol.18, No.2, pp.81-88, 2004.

  • 张继红,吴凌云,章祥荪.允许长度估计误差的 SBH 最优重构问题及其算法. 应用数学学报, 已接受.

  • 张敏,方伟武,张俊华,迟忠先. 一种新的迭代渐进多序列比对算法 IPMSA. 计算机工程, 已接受.

  • 邹国华. 参数空间被限制时有限总体的可容许估计. 数学学报, 47(5):1019-1024, 2004.

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      2005                                                                             

  • Shao-Gen Gao, Guo-Ying Li and D. Wang, A New Approach for Detecting Multivariate Outliers.Communications in Statistics: Theory and Methods, Volume34, Issue 9, 2005

  • Zhui Zhao,Qizhai Li,Changqing Zeng, Huanming Yang, Jun Yu. Neighboring-Nucleotide Effects on the Mutation Pattern of Rice Genome， Genomics, Proteomics & Bioinformatics,(Accepted)

  • 赵辉,李启寨,李俊,曾长青,于军. 水稻和拟南芥基因组碱基组分与变异的相关性.中国科学C辑.（一审通过）

  • 张敏，方伟武，张俊华，迟忠先，一种新的迭代渐进多序列比对算法计算机工程与应用， Vol.41,No.2,72-74,2005

  • 李启寨,李国英.识别DNA序列翻译起点的统计方法及其应用.(已投稿)

  • Shaogen Gao and Guoying Li, Detect Motifs by Markov Chain Imbedding Method,(Submitted)

  • Zhui Zhao, Qizhai Li,Jun Li, Changqing Zeng,Jun Yu,The Disequilibrium of Di-pyridine on the Intron Sequences of Double-Stranded DNA,(Submitted)

  • Shaogen Gao, Weimou Zheng and Guoying Li, Modeling Splice Signals with Grouped Weight Matrices.(Submitted)

  • Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu, Yu-Ying Zhao and Wei Zhang. Minimum conflict haplotyping from genotype data and SNP fragments. Submitted to Bioinformatics.

  • Luonan Chen, Ling-Yun Wu, Yong Wang and Xiang-Sun Zhang. Inferring Protein Interactions from Experimental Data by Association Probabilistic Method. Proteins: Structure, Function, and Bioinformatics, in press.

  • Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu and Luonan Chen. Models and algorithms for the haplotyping problem. Current Bioinformatics, in press.

  • Zhen-Ping Li, Xiang-Sun Zhang and Luonan Chen. Unique optimal foldings of proteins on a triangular lattice. Applied Bioinformatics, in press.

  • Ruiqi Wang, Xiang-Sun Zhang and Luonan Chen. Synchronization of gene regulatory networks by signaling molecule. Journal of Biology Rhythm, in press.

  • Ji-Hong Zhang, Ling-Yun Wu and Xiang-Sun Zhang. A reconstruction algorithm to DNA sequencing by hybridization with   target DNA length error. Acta Mathematicae Applicatae Sinica, Vol. 28, No. 3, pp. 385-395, 2005. (in Chinese)

  • Zhen-Ping Li, Wen-Feng Zhou, Xiang-Sun Zhang and Luonan Chen. A parsimonious tree-grow method for haplotype inference. Bioinformatics, Vol. 21, No. 17, pp. 3475-3481, 2005.

  • Yu-Ying Zhao, Ling-Yun Wu, Ji-Hong Zhang, Rui-Sheng Wang and Xiang-Sun Zhang. Haplotype assembly from aligned from aligned weighted SNP fragments. Computational Biology and Chemistry, Vol. 29, No. 4, pp. 281-287, 2005.

  • Yong Wang, Zhong-Wei Zhan, Ling-Yun Wu, and Xiang-Sun Zhang. An improved self-organizing map algorithm for protein folding and its realization. Journal of Systems Science and Mathematical Sciences, Vol. 25, No. 4, 2005.

  • Tianshou Zhou, Luonan Chen, Yun Tang and Xiang-Sun Zhang. Aligning multiple protein structures by deterministic annealing. Journal of Bioinformatics and Computational Biology, Vol. 3, No. 4, pp. 837-860, 2005.

  • Rui-Sheng Wang, Ling-Yun Wu, Zhen-Ping Li, Xiang-Sun Zhang.Haplotype reconstruction from SNP fragments by minimum error correction. Bioinformatics, Vol. 21, No. 10, pp. 2456-2462, 2005.

  • Xiang-Sun Zhang, Yong Wang, Zhong-Wei Zhan, Ling-Yun Wu, and Luonan Chen.Expolring protein's optimal HP configurations by self-organizing. Journal of Bioinformatics and Computational Biology, Vol. 3, No. 2, pp. 385-400, 2005.

  • Xiang-Sun Zhang, Zhong-Wei Zhan, Yong Wang and Ling-Yun Wu. An attempt to explore the similarity of two proteins by their surface shapes. Operations Research and Its Applications, Lecture Notes in Operations Research, 5, pp. 276-284, World Publishing Corporation, Beijing, 2005.

  • Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. A framwork for structural similarity search in protein. Operations Research and Its Applications, Lecture Notes in Operations Research, 5, pp. 285-295, World Publishing Corporation, Beijing, 2005.

  • Rui-Sheng Wang, Xiang-Sun Zhang and Li Sheng. Haplotype inference by pure parsimony via genetic algorithm. Operations Research and Its Applications, Lecture Notes in Operations Research, 5, pp. 296-306, World Publishing Corporation, Beijing, 2005.

  • Ling-Yun Wu, Xiang-Sun Zhang and Ju-Liang Zhang. Capacitated facility location problem with general setup cost. Computers and Operations Research, in press.

  • X.-S. Zhang, D.-G. Liu and L.-Y. Wu (eds.). Operations Research and Its Applications, Lecture Notes in Operations Research, 5, Proceedings of the Forth International Symposium of OR and Application, Lhasa-Nyingchi, Tibet, China, 9-13 August, 2005, World Publishing Corporation, Beijing, 2005.

  • Zou Guohua and Zhao Hongyu. Family-based association tests for different family structures using pooled DNA. Annals of Human Genetics, 69 (4), 429-442,2005.

  • Zou Guohua and Zuo Yijun. On the sample size requirement in genetic association tests when the proportion of false positives is controlled. Genetics, accepted.

  • Zuo Yijun, Zou Guohua and Zhao Hongyu. Two-stage designs in case-control association analysis. The CSPS-IMS Joint Conference, Beijing, 2005

  • Lixia Jin, Huanwen Tang, Weiwu Fang, Prediction of Protein Subcellular Locations Using a New Measure of Information Discrepancy， Journal of Bioinformatics and Computational Biology,Vol.3, No.4, 915-927,2005.

  • Min Zhang , Weiwu Fang , Junhua Zhang , Zhongxian Chi, MSAID: multiple sequence alignment based on a measure of information discrepancy, Computational Biology and Chemistry, 29, 175–181, 2005.

  • Zhen Qi, Yan Cui, Weiwu Fang, Lunjiang Ling and Runsheng Chen. Autosomal Similarity Revealed by Eukaryotic Genomic Comparison, Journal of Biological Physics,Vol. 30, No. 4, 305–312,2004

  • Gu M. G., Sun Liuquan and Zuo, G. A baseline-free procedure for transformation models under interval censorship. Lifetime Data Analysis, 11(4), 473-488,2005

  • Jianguo Sun, Do-Hwan Park, Sun Liuquan and Xingqiu Zhao. Semiparametric regression analysis of longitudinal data with informative observation times. Journal of the American Statistical Association, 100(471), 882-889.

  • Sun J.and Sun Liuquan. Semiparametric linear transformation models for current status Data. Canadian Journal of Statist. 33(1), 85-96,2005

  • Liu H.and Sun Liuquan. A regression method for truncated and censored data. Acta Math. Appl. Sinica, 28(1), 1-10,2005

  • Zhou Y.and Sun Liuquan. Sequential confidence bands for quantile densities under truncated and censored data. Acta Math. Appl. Sinica (English Series), 21(2), 311-322,2005

  • Liu H.,Sun Liuquan and Zhu L. Asymptotics on semiparametric analysis of multivariate failure time data under the additive hazards model. Acta Math. Appl. Sinica (English Series), 21(2), 237-246,2005

  • Zhang Z.,Sun J. and Sun Liuquan. Statistical analysis of current status data with informative observation times. Statistics in Medicine, 24(9), 1399-1307,2005

  • Zhang, Z.,Sun Liuquan, Zhao, X. and Sun J. Regression analysis of interval-censored failure time data with linear transformation models. Canadian Journal of Statist., 33(1), 61-70,2005

  • Sun Liuquan,Do-Hwan Park and Jianguo Sun. The additive hazards model for recurrent gap times. To appear in Statistica Sinica,2005

  • Sun Liuquan,Jingxia Liu, Mei-Jie Zhang and Jianguo Sun. Modeling the subdistribution of a competing risk. To appear in Statistica Sinica,2005

  • Sun Liuquan,Lianming Wang and Jianguo Sun. Estimation of the association for bivariate interval-censored data. To appear in Scandinavian Journal of Statistics.

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      2006                                                                             

  • Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu, and Wei Zhang. Minimum conflict individual haplotyping from SNP fragments and related genotype. Evolutionary Bioinformatics Online, 2006, 2, 271-280.

  • Rui-Sheng Wang, Ling-Yun Wu, Xiang-Sun Zhang and Luonan Chen. A Markov Chain Model for Haplotype Assembly from SNP Fragments. Genome Informatics, Vol. 17, No. 2. 2006.

  • Luonan Chen, Ling-Yun Wu, Yong Wang, Shihua Zhang and Xiang-Sun Zhang. Revealing divergent evolution, identifying circular permutations and detecting active-sites by protein structure comparison. BMC Structural Biology, 2006, 6:18, doi:10.1186/1472-6807-6-18.

  • Yong Wang, Trupti Joshi, Xiang-Sun Zhang, Dong Xu, and Luonan Chen. Inferring gene regulatory networks from multiple microarray datasets. Bioinformatics, 22(19):2413-2420; doi:10.1093/bioinformatics/btl396, 2006.

  • Luonan Chen, Ling-Yun Wu, Yong Wang and Xiang-Sun Zhang. Inferring Protein Interactions from Experimental Data by Association Probabilistic Method. Proteins: Structure, Function, and Bioinformatics, Vol. 62, pp. 833-837, 2006.

  • Yong Wang, Ling-Yun Wu, Luonan Chen and Xiang-Sun Zhang. Supervised classification of protein structures based on convex hull representation. International Journal of Bioinformatics Research and Applications, Vol. 3, No. 2, 2006.

  • Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang and Luonan Chen. Exploring the classification of protein structures on geometric patterns by neural networks. International Journal of Computational Intelligence Research, Vol. 2, No. 1, pp. 105-109, 2006.

  • Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu and Luonan Chen. Models and algorithms for the haplotyping problem. Current Bioinformatics, Vol. 1, No. 1, pp. 105-114, 2006.

  • Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. Chinese journal of Bioinformatics. 4, 153-156, 2006

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      2007                                                                             

  • Yong Wang, Ling-Yun Wu, Luonan Chen and Xiang-Sun Zhang, Supervised classification of protein structures based on convex hull representation, International Journal of Bioinformatics Research and Applications, Vol. 3, No. 2, 2007.

  • Shihua Zhang, Rui-Sheng Wang, Xiang-Sun Zhang, Identification of overlapping community structure in complex networks using fussy c-means clustering, Physica A, 374, pp.483-490, 2007

  • Ji-Hong Zhang, Ling-Yun Wu, Yu-Ying Zhao, Xiang-Sun Zhang, An optimization approach to the reconstruction of positional DNA sequencing by hybridization with errors, European J. of Operational research, 182, pp.413-427, 2007

  • Shihua Zhang, Rui-Sheng Wang, and Xiang-Sun Zhang, Uncovering fuzzy community structure in complex networks, Physical Review E, 76, 046103, 2007

  • Shihua Zhang, Guangxu Jin, Xiang-Sun Zhang, Luonan Chen, Discovering functions and revealing mechanisms at molecular level from biological networks, Proteomics, 7(16), 2856-2869, 2007

  • Zhenping Li, Shihua Zhang, Yong Wang, Xiang-Sun Zhang, and Luonan Chen, Alignment of molecular networks by integer quadratic programming, Bioinformatics, Vol. 23, No. 13, 1631-1639, 2007

  • Shi-Hua Zhang, Xuemei Ning, Xiang-Sun Zhang, Graph kernels, hierarchical clustering, and network community structure: experiments and comparative analysis, European Physical J, B, 57, 67-74, 2007

  • Yong Wang, Ling-Yun Wu, Ji-Hong Zhang, Zhong-Wei Zhan, Xiang-Sun Zhang and Luonan Chen. Evaluating protein similarity from coarse structures. IEEE/ACM Transactions on Computational Biology and Bioinformatics, in press, 2007.

  • Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen, Analysis of the protein surface patterns by pocket similarity network, Protein and Peptide Letters, 2007, In press

  • Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen, Clustering protein surface cavities based on community structure feature of pocket similarity network, International Journal of Bioinformatics Research and Applications, 2007, In press

  • Rui-Sheng Wang, Wang Yong, Xiang-Sun Zhang, Luonan Chen, Inferring transcriptional regulatory networks from high-throughput data, Bioinforamtics, doi:10.1093/bioinformatics/btm465, 2007

  • Rui-Sheng Wang, Wang Yong, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen, Analysis of multi-domain cooperation for predicting of protein-protein interactions, BMC Bioinformatics, 8:391, 2007

  • Rui-Sheng Wang, Shihua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen, Clustering complex networks and biological networks by Nonnegative Matrix Factorization with various similarity measures, Neurocomputing, accept

  • Guangxu Jin, Yaping Sun, Xubing Zhang, Shihua Zhang, Yong Wang, Xiang-Sun Zhang and Luonan Chen, Hubs and network motifs: connectors between human diseases and their pathogenesis, Molecular Systems Biology, in submission

  • Guangxu Jin, Shihua Zhang, Xiang-Sun Zhang, and Luonan Chen, Hubs with network motifs characterize pathways in protein interaction network of yeast, Plos One, in submission

  • Yong Wang, Trupti Joshi, Xiang-Sun Zhang, Dong Xu, Luonan Chen, Recovering gene regulation and identifying compound targets from multiple time course expression datasets, submitted to BMC Bioinformatics

  • Jinshan Li, Xiang-Sun Zhang, An optimization model for gene regulatory network reconstruction with known biological information, Optimization and System Biology, Lecture Notes in Operations Research, vol.7, pp.35-44, World Publishing Corporation, 2007

  • Yong Wang, Rui-Sheng Wang, Xiang-Sun Zhang and Luonan Chen, Establishing protein functional linkage in a systematic way, Optimization and System Biology, Lecture Notes in Operations Research, vol.7, pp.75-88, World Publishing Corporation, 2007

  • Guangxu Jin, Shihua Zhang, Xiang-Sun Zhang and Luonan Chen, New insights into network motif clusters from the views of cellular localizations and signal pathways, Optimization and System Biology, Lecture Notes in Operations Research, vol.7, pp.100-109, World Publishing Corporation, 2007

  • Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen, An approach for clustering protein pockets into similar groups, Optimization and System Biology, Lecture Notes in Operations Research, vol.7, pp.204-212, World Publishing Corporation, 2007

  • Zhong-yuan Zhang, Xiang-Sun Zhang, Two improvements of NMF used for tumor clustering, Optimization and System Biology, Lecture Notes in Operations Research, vol.7, pp.242-249, World Publishing Corporation, 2007

  • Rui-Sheng Wang, Shihua Zhang, Xiang-Sun Zhang, Luonan Chen, Identifying modules in complex networks by a graph-theoretical method and its application in protein interaction networks, ICIC2007, Lecture Notes in Artificial Intelligence, 4682, 1090-1101, 2007

  • Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen. Detecting community structure in complex networks by optimal rearrangement clustering, PAKDD 2007 workshop on Data Mining in Biomedical Applications, Lecture Notes in Artificial Intelligence, In press

  • X.-S.Zhang, L.Chen, L.-Y.Wu and Y.Wang (eds.), Optimization and System Biology, Lecture Notes in Operations Research, 7, Proceedings of the First International Symposium of Optimization and System Biology, Beijing, China, 8-10 August, 2007, World Publishing Corporation.

  • Wang J, Zou Guohua and Zhao H: DNA pooling: methods and applications in association studies. Current Topics in Human Genetics: Studies in Complex Diseases, Chapter 8, Deng H., Shen H. and Liu Y. Eds., World Scientific Publishing Company.

  • Liang H and Zou Guohua: Analysis of relation between virologic responses and immunologic responses, patient's factors in AIDS clinical trials using a semiparametric mixed-effects model. Biometrical Journal, 49(3), 406-415.

  • Zou Guohua, Wan ATK, Wu X and Chen T: Estimation of regression coefficients of interest when other regression coefficients are of no interest: the case of non-normal errors. Statistics and Probability Letters, 77(8), 803-810.

  • Wan ATK, Zou Guohua and Qin H: On the sensitivity of restricted least squares estimators to covariance mis-specification. Econometrics Journal, 10(3), 471-487.

  • Wan ATK, Zou Guohua and Banerjee A: The power of autocorrelation tests near the unit root in models with possibly mis-specified linear restrictions. Economics Letters, 94(2), 213-219.

  • 邹国华，冯士雍：超总体模型下有限总体的估计，《系统科学与数学》 ，27(1), 27-38.

  • 杨军，邹国华: 比例Bootstrap 及其方差估计的相合性，《中国科学院研究生院学报》, 24(3), 273-279.

  • Junhua Zhang, Shihua Zhang and Xiang-Sun Zhang，Detecting community structure in complex networksbased on a measure of information discrepancy，Physica A, doi:10.1016/j.physa.2007.10.061.

  • 孙六全：Sun, J, Sun, LQ and Liu, D (2007). Regression analysis of longitudinal data in the presence of informative observation and censoring times. J. Amer. Statist. Assoc. 102(480), 1397-1406.

  • 孙六全：Zhang, Z, Sun, LQ, Sun, J and Finkelstein, DM (2007). Regression analysis of failure time data with informative interval censoring. Stat. Med., 26(12), 2533-2546.

  • 孙六全： Sun, J, Sun, LQ and Zhu, C (2007). Testing the proportional odds model for interval-censored data. Lifetime Data Anal., 13(1), 37-50.

  • 石 坚(2007). 高维线性模型中的经验似然。《系统科学与数学》， 27(1), 124-133.

  • 赵大年、石坚（2007）. 对一个统计控制问题的再探讨。《数理统计与管理》, 26(6), 1034-1038.

  • Wang Qihua and Sun Zhihua (2007). Estimation in partially linear models with missing responses at random. Journal of Multivariate Analysis. 98, 1470-1493

  • Wang Qihua and Yu Keming (2007). Likelihood-based kernel estimation in semiparametric error-in-covariables models with Validation Data. Journal of Multivariate Analysis, 98, 455-480.

  • Wang Qihua (2007). M-estimators based on inverse probability weighted estimating equations with response missing at random. Communications in Statistics-Theory and Methods. 36: 1091-1103.

  • Sun Zhihua and Wang Qihua (2007). Semiparametric estimation of survival function with cause of death data missing at random. Journal of Applied Probability and Statistics. 2. 189-209.

  • Li Bang-He, Explicit relation between the solutions of the heat and the Hermite heat equation, Z. angew. Math. Phys. 58 (2007)959-968

  • MR2341905 Li, Bang-he; Lü, Zhi Smooth free involution of $H\Bbb CP\sp 3$ and Smith conjecture for imbeddings of $S\sp 3$ in $S\sp 6$. Math. Ann. 339 (2007), no. 4, 879--889. 57Q45 (57R67 57S17) PDF Doc Del Clipboard Journal Article

  • MR2336591 Li, Bang-He; Li, Tian-Jun Circle-sum and minimal genus surfaces in ruled 4-manifolds. Proc. Amer. Math. Soc. 135 (2007), no. 11, 3745--3753 (electronic). 57R40 (57N13 57R17 57R57) PDF Doc Del Clipboard Journal Article

  • MR2314687 Li, Bang-he; Li, Ya-qing; Zhu, Guang-tian Application of irreducible decomposition of polynomials over algebraic extension fields in cryptography. Acta Anal. Funct. Appl. 9 (2007), no. 1, 18--20. 94A60 PDF Doc Del Clipboard Journal Article

  • MR2311360 Li, Bang-He; Li, Tian-Jun On the diffeomorphism groups of rational and ruled 4-manifolds. J. Math. Kyoto Univ. 46 (2006), no. 3, 583--593. 57Rxx PDF Doc Del Clipboard Journal Article

  • MR2279511 (2007i:35099) Li, Bang-He Relating Fourier hyperfunctions and extended Fourier hyperfunction to Hermite heat equation. Acta Anal. Funct. Appl. 8 (2006), no. 4, 295--303. 35K05 (46F15) PDF Doc Del Clipboard Journal Article

    • Abstract of some papers in 2004 (PDF) 　

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